Useful Links

Gene Expression

  • BioGPS – Mouse and human gene expression atlas
  • CIRCA – Mouse circadian gene expression atlas
  • Attie Lab Diabetes Database – Mouse diabetes and obesity gene expression atlas
  • MGI – Mouse genome annotation
  • CITGeneDB – A comprehensive database of human and mouse genes enhancing or suppressing Cold-induced thermogenesis, validated by perturbation experiments in mice
  • PrimerBank – Primer design for QPCR
  • Cellxgene – Scalable single-cell visualization for biomedical research
  • Genebridge – Gene-GO Correlation Across Expression Datasets
  • GenePattern – Computational biology open-source software for the analysis of genomic data
  • Genekitr – Gene Analysis Toolkit base on R language

Transcriptional/Epigenetic regulation

  • DAVID – Database for Annotation, Visualization and Integrated Discovery
  • Enrichr – Gene set enrichment analysis tools
  • Cistrome – Predict transcription factors that regulate genes of interest

Single-Cell Analyses

  • Tabula Muris – A compendium of single cell transcriptome data from the model organism Mus musculus, containing nearly 100,000 cells from 20 organs and tissues
  • Tabula Sapiens – Tabula Sapiens is a benchmark, first-draft human cell atlas of nearly 500,000 cells from 24 organs of 15 normal human subjects.
  • VISION – Functional interpretation of single cell RNA-seq latent manifolds
  • Cellenics – open-source platform to analyze single-cell RNA sequencing datasets




Mouse Phenotyping

  • IMPC – An international effort by 19 research institutions to identify the function of every protein-coding gene in the mouse genome
  • CalR – A web application for indirect calorimetry analysis (Alex Banks Lab)



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